Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vcan ENSRNOG00000029212

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Description

versican [Source:RGD Symbol;Acc:619940]

Gene Synonyms

Cspg2, GHAP, PG-M

Location

Primary_assembly 2: 22,497,035-22,595,955 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 313 orthologues, 7 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045532.8	Vcan-201	12270	3357aa	ENSRNOP00000045935.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A8Y6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000151754.1	Vcan-205	9530	3050aa	ENSRNOP00000100310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000088313.3	Vcan-204	9470	2391aa	ENSRNOP00000074854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K944 A6I4N2	-
ENSRNOT00000067456.6	Vcan-203	7062	1621aa	ENSRNOP00000058873.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z9N6	-
ENSRNOT00000063821.5	Vcan-202	4164	655aa	ENSRNOP00000062961.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9ERB4-2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data