Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Stx1a ENSRNOG00000029165

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Description

syntaxin 1A [Source:RGD Symbol;Acc:69430]

Gene Synonyms

P35A

Location

Primary_assembly 12: 27,278,517-27,306,471 reverse strand.

GRCr8:CM070402.1

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues, 11 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000049601.4	Stx1a-201	2131	288aa	ENSRNOP00000040699.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1E1ERK2 A0A8L2ULG5 P32851	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000097493.2	Stx1a-202	1431	266aa	ENSRNOP00000096833.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AVN2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data