Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Foxr1 ENSRNOG00000029089

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Description

forkhead box R1 [Source:RGD Symbol;Acc:1309739]

Gene Synonyms

LOC315601

Location

Primary_assembly 8: 53,657,256-53,669,629 reverse strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 83 orthologues, 34 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000158108.1	Foxr1-203	1386	386aa	ENSRNOP00000110554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000122581.1	Foxr1-202	1430	281aa	ENSRNOP00000112255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000049125.7	Foxr1-201	1245	335aa	ENSRNOP00000050539.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LTW6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data