Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Gene: Pbrm1 ENSRNOG00000028227

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Description

polybromo 1 [Source:RGD Symbol;Acc:1565549]

Gene Synonyms

LOC306254, RGD1565549

Location

Primary_assembly 16: 6,219,917-6,319,336 forward strand.

GRCr8:CM070406.1

About this gene

This gene has 8 transcripts (splice variants), 219 orthologues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000094186.2	Pbrm1-202	8164	1705aa	ENSRNOP00000079535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZMW9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000147340.1	Pbrm1-208	8213	1693aa	ENSRNOP00000106061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000137529.1	Pbrm1-207	8180	1679aa	ENSRNOP00000112238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000016581.10	Pbrm1-201	8060	1642aa	ENSRNOP00000016581.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZT52	-
ENSRNOT00000104141.2	Pbrm1-204	8051	1639aa	ENSRNOP00000092107.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AV81	-
ENSRNOT00000136414.1	Pbrm1-206	8014	1676aa	ENSRNOP00000104472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000109995.2	Pbrm1-205	7895	1587aa	ENSRNOP00000081368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G5U9	-
ENSRNOT00000096494.2	Pbrm1-203	7883	1593aa	ENSRNOP00000096705.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AR61	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data