Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Snx17 ENSRNOG00000026884

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Description

sorting nexin 17 [Source:RGD Symbol;Acc:1306424]

Gene Synonyms

LOC298836

Location

Primary_assembly 6: 30,897,501-30,902,972 reverse strand.

GRCr8:CM070396.1

About this gene

This gene has 3 transcripts (splice variants), 207 orthologues, 2 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115042.2	Snx17-202	2062	556aa	ENSRNOP00000082948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GA49	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000091264.3	Snx17-201	1909	470aa	ENSRNOP00000070417.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXV4 A6HA69 Q6AYS6	-
ENSRNOT00000118894.2	Snx17-203	1885	462aa	ENSRNOP00000095437.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMM3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data