Gene: Palb2 ENSRNOG00000025126

Description

partner and localizer of BRCA2 [Source:RGD Symbol;Acc:1304759]

Gene Synonyms

LOC293452, RGD1304759

Location

Primary_assembly 1: 186,096,312-186,120,302 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 5 transcripts (splice variants), 172 orthologues and is associated with 39 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000047420.7	Palb2-201	3682	1110aa	ENSRNOP00000041446.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZM14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000146759.1	Palb2-204	3807	1101aa	ENSRNOP00000103112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000113438.2	Palb2-203	3749	1103aa	ENSRNOP00000077610.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y7Q7	-
ENSRNOT00000146928.1	Palb2-205	3610	1086aa	ENSRNOP00000111776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000107389.2	Palb2-202	1504	384aa	ENSRNOP00000093433.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKN4 A6I8W2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,