Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
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Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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ID History
- Gene history

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Gene: Smg5l1 ENSRNOG00000024507

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Description

Smg5 nonsense mediated mRNA decay factor like 1 [Source:RGD Symbol;Acc:1309489]

Gene Synonyms

LOC314915, RGD1309489

Location

Primary_assembly 7: 77,802,238-77,936,482 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 3 transcripts (splice variants), 27 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095375.2	Smg5l1-202	3755	973aa	ENSRNOP00000082139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000101664.2	Smg5l1-203	3589	973aa	ENSRNOP00000095623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUK4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000037006.7	Smg5l1-201	3569	973aa	ENSRNOP00000091020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ADQ4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data