Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Gene: Cs ENSRNOG00000023520

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Description

citrate synthase [Source:RGD Symbol;Acc:620330]

Location

Primary_assembly 7: 1,342,942-1,375,938 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 3 transcripts (splice variants), 243 orthologues and is associated with 20 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000033726.7	Cs-201	1595	501aa	ENSRNOP00000034921.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V936	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000116919.2	Cs-203	3012	490aa	ENSRNOP00000087073.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GES0	-
ENSRNOT00000115725.2	Cs-202	2919	459aa	ENSRNOP00000096005.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GLW2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data