Gene: Alms1 ENSRNOG00000022343

Description

ALMS1, centrosome and basal body associated protein [Source:RGD Symbol;Acc:1311590]

Gene Synonyms

LOC297408

Location

Primary_assembly 4: 119,683,076-119,783,471 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 4 transcripts (splice variants), 110 orthologues, 3 paralogues and is associated with 30 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101178.2	Alms1-202	11174	3645aa	ENSRNOP00000079051.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G4M9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000109581.2	Alms1-203	11886	3589aa	ENSRNOP00000076984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XVN1	-
ENSRNOT00000113260.2	Alms1-204	11030	3600aa	ENSRNOP00000080223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSK7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000045735.7	Alms1-201	10925	3565aa	ENSRNOP00000050674.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LVG9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,