Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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- Gene history

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Gene: Tcea1l1 ENSRNOG00000022323

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Description

transcription elongation factor A1-like 1 [Source:RGD Symbol;Acc:1591965]

Gene Synonyms

AABR07017110.1, LOC362479, LOC498453, MGC116288

Location

Primary_assembly 5: 19,429,261-19,466,504 reverse strand.

GRCr8:CM070395.1

About this gene

This gene has 2 transcripts (splice variants), 214 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000010893.8	Tcea1l1-201	2354	301aa	ENSRNOP00000010893.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q4Y0 A6K054	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000104892.2	Tcea1l1-202	1918	277aa	ENSRNOP00000084958.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4KLL0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data