Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Tlr5 ENSRNOG00000022067

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Description

toll-like receptor 5 [Source:RGD Symbol;Acc:631351]

Location

Primary_assembly 13: 97,166,405-97,192,525 forward strand.

GRCr8:CM070403.1

About this gene

This gene has 8 transcripts (splice variants), 185 orthologues, 26 paralogues and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000152456.1	Tlr5-208	12409	871aa	ENSRNOP00000099668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000136113.1	Tlr5-206	9818	871aa	ENSRNOP00000107919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7	-
ENSRNOT00000109851.2	Tlr5-204	9663	871aa	ENSRNOP00000092561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7 G3V6F8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000127807.1	Tlr5-205	9610	871aa	ENSRNOP00000107039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7	-
ENSRNOT00000004821.6	Tlr5-201	9170	871aa	ENSRNOP00000004821.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7 G3V6F8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000145129.1	Tlr5-207	9091	871aa	ENSRNOP00000102645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JGM7	-
ENSRNOT00000094732.2	Tlr5-202	6114	859aa	ENSRNOP00000097755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V6F8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000107238.2	Tlr5-203	5342	859aa	ENSRNOP00000086526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0LP03	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data