Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Smox ENSRNOG00000021255

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Description

spermine oxidase [Source:RGD Symbol;Acc:1306049]

Gene Synonyms

LOC308652

Location

Primary_assembly 3: 139,184,798-139,220,170 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 7 transcripts (splice variants), 209 orthologues, 10 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000079264.3	Smox-202	2229	585aa	ENSRNOP00000070554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JY83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000028876.5	Smox-201	2140	555aa	ENSRNOP00000028876.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HQE1 F7F9S8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000128745.1	Smox-207	2036	519aa	ENSRNOP00000100139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000104527.2	Smox-204	1732	419aa	ENSRNOP00000090716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AE29 A6HQE2	-
ENSRNOT00000109582.2	Smox-205	907	248aa	ENSRNOP00000086718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6T7	-
ENSRNOT00000096195.2	Smox-203	892	244aa	ENSRNOP00000077137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y9C4	-
ENSRNOT00000117336.2	Smox-206	733	190aa	ENSRNOP00000093779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJG4	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data