Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene expression
Pathway
Molecular interactions
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Gene: Ecm1 ENSRNOG00000021166

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Description

extracellular matrix protein 1 [Source:RGD Symbol;Acc:620357]

Location

Primary_assembly 2: 185,976,440-185,981,606 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000028740.7	Ecm1-201	1888	562aa	ENSRNOP00000028740.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QGP4 A6K307 Q62894	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000147837.1	Ecm1-203	1834	544aa	ENSRNOP00000105411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000105287.2	Ecm1-202	1736	547aa	ENSRNOP00000085798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A022	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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