Gene: Setdb1 ENSRNOG00000021143

Description

SET domain bifurcated histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1308370]

Gene Synonyms

LOC100911180, LOC310668, LOC689883, Setdb1_predicted

Location

Primary_assembly 2: 185,587,722-185,618,982 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 3 transcripts (splice variants), 244 orthologues, 21 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000028709.9	Setdb1-201	4490	1322aa	ENSRNOP00000028709.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A081	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000077325.3	Setdb1-202	4538	1302aa	ENSRNOP00000073356.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K5A7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000111803.2	Setdb1-203	4262	1210aa	ENSRNOP00000097818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASK2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,