Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ctsd ENSRNOG00000020206

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Description

cathepsin D [Source:RGD Symbol;Acc:621511]

Location

Primary_assembly 1: 206,956,944-206,968,821 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 214 orthologues, 8 paralogues and is associated with 24 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107378.2	Ctsd-202	1989	407aa	ENSRNOP00000093455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AIK0 A0A8I6AKF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000027407.6	Ctsd-201	1876	406aa	ENSRNOP00000027407.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7F3R8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000117470.2	Ctsd-203	1236	374aa	ENSRNOP00000092879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HY44	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data