Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Agrn ENSRNOG00000020205

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Description

agrin [Source:RGD Symbol;Acc:2067]

Gene Synonyms

AGR

Location

Primary_assembly 5: 172,031,528-172,064,539 reverse strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants), 192 orthologues, 26 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045678.7	Agrn-201	7580	2066aa	ENSRNOP00000050623.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000047854.5	Agrn-202	7599	2047aa	ENSRNOP00000040828.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A2F1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000150948.1	Agrn-204	7337	1959aa	ENSRNOP00000105718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000154534.1	Agrn-205	7304	1948aa	ENSRNOP00000108828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000126412.1	Agrn-203	7252	1949aa	ENSRNOP00000103040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data