Gene: Ptpn22 ENSRNOG00000019614

Description

protein tyrosine phosphatase, non-receptor type 22 [Source:RGD Symbol;Acc:1307992]

Gene Synonyms

LOC295338, Ptpn8

Location

Primary_assembly 2: 194,045,746-194,103,209 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 4 transcripts (splice variants), 126 orthologues, 36 paralogues and is associated with 38 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000146905.1	Ptpn22-203	2891	814aa	ENSRNOP00000107210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000158318.1	Ptpn22-204	2881	780aa	ENSRNOP00000111980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000026556.7	Ptpn22-201	2673	778aa	ENSRNOP00000026556.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A2D5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000120162.2	Ptpn22-202	2443	770aa	ENSRNOP00000087016.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A706	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,