Gene: Ttc9c ENSRNOG00000019464

Description

tetratricopeptide repeat domain 9C [Source:RGD Symbol;Acc:1359253]

Gene Synonyms

MGC73022, RGD1359253

Location

GRCr8:CM070391.1

About this gene

This gene has 2 transcripts (splice variants), 179 orthologues, 17 paralogues and is associated with 3 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095692.2	Ttc9c-202	3181	171aa	ENSRNOP00000096266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AP96 A6HZU8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000026376.7	Ttc9c-201	1533	110aa	ENSRNOP00000026376.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXC0 Q6P5P3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.