Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Stx4 ENSRNOG00000019302

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Description

syntaxin 4 [Source:RGD Symbol;Acc:621019]

Gene Synonyms

Stx4a

Location

Primary_assembly 1: 191,881,559-191,896,774 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants), 191 orthologues, 11 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095917.2	Stx4-203	2930	462aa	ENSRNOP00000078300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000026224.4	Stx4-201	2646	378aa	ENSRNOP00000026224.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XA32 A6I9V1	-
ENSRNOT00000164988.1	Stx4-204	2498	318aa	ENSRNOP00000105427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000082121.3	Stx4-202	1599	352aa	ENSRNOP00000074754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XY59	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data