Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Stx1b ENSRNOG00000019193

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Description

syntaxin 1B [Source:RGD Symbol;Acc:3784]

Gene Synonyms

P35B, Stx1b2, Stx2

Location

Primary_assembly 1: 191,833,743-191,871,633 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants), 197 orthologues, 11 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109173.2	Stx1b-202	2960	322aa	ENSRNOP00000077893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y9T5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000026063.6	Stx1b-201	2993	288aa	ENSRNOP00000026063.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I9V0 P61265	-
ENSRNOT00000125637.1	Stx1b-203	2970	265aa	ENSRNOP00000100279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000129834.1	Stx1b-204	1434	320aa	ENSRNOP00000101251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data