Gene: Sec16a ENSRNOG00000019122

Description

SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]

Gene Synonyms

LOC100360302

Location

Primary_assembly 3: 29,627,779-29,662,319 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 3 transcripts (splice variants), 193 orthologues, 1 paralogue and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000111138.2	Sec16a-202	8949	2366aa	ENSRNOP00000082279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTA3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000064083.5	Sec16a-201	8889	2346aa	ENSRNOP00000060572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZN76	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000114026.2	Sec16a-203	8007	2116aa	ENSRNOP00000079931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZPJ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,