Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Phenotypes
Genetic Variation
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- Structural variants
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Gene: Rps17l2 ENSRNOG00000019106

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Description

ribosomal protein S17 like 2 [Source:RGD Symbol;Acc:1559955]

Gene Synonyms

LOC367324, RGD1559955, Rps17l1

Location

Primary_assembly 1: 144,705,149-144,707,734 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 2 transcripts (splice variants), 211 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000025888.9	Rps17l2-201	448	137aa	ENSRNOP00000025888.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UHQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000100646.2	Rps17l2-202	466	135aa	ENSRNOP00000096874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JCF2 P04644	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data