Gene: Cln3 ENSRNOG00000019103

Description

CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:RGD Symbol;Acc:1359537]

Gene Synonyms

Cln3p, MGC94583

Location

Primary_assembly 1: 190,586,650-190,597,929 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and is associated with 15 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000025898.6	Cln3-201	1674	438aa	ENSRNOP00000025898.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7F0I2 Q5XIH8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000172311.1	Cln3-203	1674	438aa	ENSRNOP00000109237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000117379.2	Cln3-202	1602	414aa	ENSRNOP00000095097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALZ9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,