Gene: Clcf1 ENSRNOG00000018752

Description

cardiotrophin-like cytokine factor 1 [Source:RGD Symbol;Acc:1303171]

Gene Synonyms

Bsf3, Clc, LOC365395, MGC112574, NNT-1

Location

Primary_assembly 1: 210,937,255-210,947,064 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 187 orthologues, 2 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114622.2	Clcf1-202	2185	348aa	ENSRNOP00000089160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GGY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000143211.1	Clcf1-203	1917	261aa	ENSRNOP00000111334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000025342.9	Clcf1-201	1671	230aa	ENSRNOP00000025343.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7EKG3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,