Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cd40 ENSRNOG00000018488

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Description

CD40 molecule [Source:RGD Symbol;Acc:619830]

Gene Synonyms

LOC311635, Tnfrsf5

Location

Primary_assembly 3: 174,209,719-174,224,847 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 127 orthologues, 20 paralogues and is associated with 119 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109324.2	Cd40-202	1570	309aa	ENSRNOP00000092907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000114607.2	Cd40-203	1545	289aa	ENSRNOP00000076770.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XVD8 A0A8I6A2T5	-
ENSRNOT00000101713.2	Cd40-201	1458	260aa	ENSRNOP00000086811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4J5 A6JXD7	-
ENSRNOT00000119493.2	Cd40-204	1194	204aa	ENSRNOP00000087215.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JXD6 A6JXD8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data