Gene: C3h9orf50 ENSRNOG00000018486

Description

similar to human chromosome 9 open reading frame 50 [Source:RGD Symbol;Acc:1311084]

Gene Synonyms

LOC311852, RGD1311084

Location

GRCr8:CM070393.1

About this gene

This gene has 2 transcripts (splice variants), 55 orthologues and is associated with 4 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000024953.6	C3h9orf50-201	1510	422aa	ENSRNOP00000024953.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JPQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000097005.2	C3h9orf50-202	1447	374aa	ENSRNOP00000092590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AGU8 A6JTZ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.