Gene: Tpm1 ENSRNOG00000018184

Description

tropomyosin 1 [Source:RGD Symbol;Acc:3898]

Gene Synonyms

Alpha-tm, Tma2, Tmsa, tropomyosin 3, tropomyosin 3, alpha

Location

Primary_assembly 8: 76,511,871-76,543,468 reverse strand.

GRCr8:CM070398.1

About this gene

This gene has 10 transcripts (splice variants), 221 orthologues, 3 paralogues and is associated with 23 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000057641.7	Tpm1-205	1854	326aa	ENSRNOP00000054446.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7FIS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000170351.1	Tpm1-210	2019	288aa	ENSRNOP00000110376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000024617.9	Tpm1-203	1727	284aa	ENSRNOP00000024617.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KEY1 Q6AZ25	-
ENSRNOT00000085894.3	Tpm1-206	1727	284aa	ENSRNOP00000070151.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JX64 A6KEY3	-
ENSRNOT00000112475.2	Tpm1-209	1646	257aa	ENSRNOP00000084613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GC15	-
ENSRNOT00000099012.2	Tpm1-208	1392	285aa	ENSRNOP00000085868.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A156	-
ENSRNOT00000048044.7	Tpm1-204	1297	284aa	ENSRNOP00000048499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P04692-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000024575.10	Tpm1-202	1244	281aa	ENSRNOP00000024575.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UK34 A6KEY5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000024493.9	Tpm1-201	1155	287aa	ENSRNOP00000024493.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q91XN6	-
ENSRNOT00000090288.3	Tpm1-207	1044	294aa	ENSRNOP00000074187.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7F7	-