Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Chn1 ENSRNOG00000017939

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Description

chimerin 1 [Source:RGD Symbol;Acc:620139]

Gene Synonyms

NC

Location

Primary_assembly 3: 78,917,329-79,084,197 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 9 transcripts (splice variants), 256 orthologues, 5 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000102625.2	Chn1-204	3522	580aa	ENSRNOP00000082258.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000116234.2	Chn1-207	3387	554aa	ENSRNOP00000093273.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AID6	-
ENSRNOT00000140416.1	Chn1-208	3263	476aa	ENSRNOP00000098759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000099938.2	Chn1-203	3186	468aa	ENSRNOP00000081883.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZU15	-
ENSRNOT00000102775.2	Chn1-205	3147	455aa	ENSRNOP00000097347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASS0	-
ENSRNOT00000068745.5	Chn1-201	3117	445aa	ENSRNOP00000060544.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140TAJ1	-
ENSRNOT00000147108.1	Chn1-209	3101	401aa	ENSRNOP00000112782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000098029.2	Chn1-202	3078	432aa	ENSRNOP00000093006.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHR6	-
ENSRNOT00000107752.2	Chn1-206	3014	472aa	ENSRNOP00000083871.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A036	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data