Gene: Gapvd1 ENSRNOG00000017925

Description

GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]

Gene Synonyms

LOC311880, RGD1307479

Location

Primary_assembly 3: 38,365,854-38,439,390 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 3 transcripts (splice variants), 212 orthologues, 6 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000096520.2	Gapvd1-202	6407	1484aa	ENSRNOP00000082105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZT12	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000066961.6	Gapvd1-201	6326	1457aa	ENSRNOP00000063504.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A022	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000112773.2	Gapvd1-203	6326	1457aa	ENSRNOP00000077706.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y674	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,