Gene: Chd1l ENSRNOG00000017669

Description

chromodomain helicase DNA binding protein 1-like [Source:RGD Symbol;Acc:1311935]

Gene Synonyms

LOC310707

Location

Primary_assembly 2: 187,811,954-187,890,477 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 197 orthologues, 31 paralogues and is associated with 15 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000099918.2	Chd1l-202	3244	926aa	ENSRNOP00000084164.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000115624.2	Chd1l-203	3802	873aa	ENSRNOP00000086360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A8B4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000153492.1	Chd1l-204	2945	890aa	ENSRNOP00000106464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000043937.7	Chd1l-201	2898	877aa	ENSRNOP00000048925.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4ACG6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000161080.1	Chd1l-205	2705	867aa	ENSRNOP00000109872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-