Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: Cyp20a1 ENSRNOG00000017631

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Description

cytochrome P450, family 20, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:735221]

Location

Primary_assembly 9: 69,249,844-69,299,291 forward strand.

GRCr8:CM070399.1

About this gene

This gene has 3 transcripts (splice variants), 196 orthologues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000023796.6	Cyp20a1-201	2012	462aa	ENSRNOP00000023796.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LSK6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000102866.2	Cyp20a1-202	2069	432aa	ENSRNOP00000089003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A981	-
ENSRNOT00000106777.2	Cyp20a1-203	1921	457aa	ENSRNOP00000083475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZX09	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data