Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Ambra1 ENSRNOG00000017422

.

Description

autophagy and beclin 1 regulator 1 [Source:RGD Symbol;Acc:621330]

Gene Synonyms

Nyw1

Location

Primary_assembly 3: 98,156,652-98,345,872 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 225 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045644.7	Ambra1-201	5260	1300aa	ENSRNOP00000039742.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HNE5 F1LNQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000105609.2	Ambra1-204	5157	1271aa	ENSRNOP00000091295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AF66	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000093866.2	Ambra1-203	5080	1240aa	ENSRNOP00000087603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AGV8	-
ENSRNOT00000085614.3	Ambra1-202	4987	1209aa	ENSRNOP00000073365.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K5B6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data