Summary
- Splice variants
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- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
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Phenotypes
Genetic Variation
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Pathway
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Gene: Malt1 ENSRNOG00000017181

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Description

MALT1 paracaspase [Source:RGD Symbol;Acc:1309195]

Gene Synonyms

LOC307366, Pcasp1

Location

Primary_assembly 18: 61,212,317-61,266,272 forward strand.

GRCr8:CM070408.1

About this gene

This gene has 3 transcripts (splice variants), 195 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000068418.6	Malt1-201	5154	832aa	ENSRNOP00000059281.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A980	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000164884.1	Malt1-203	5121	821aa	ENSRNOP00000108631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000094098.2	Malt1-202	3005	779aa	ENSRNOP00000097032.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ARW3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data