Gene: Arid1b ENSRNOG00000017030

Description

AT-rich interaction domain 1B [Source:RGD Symbol;Acc:708504]

Gene Synonyms

6A3-5, LOC308086, Smcf1, smcf-1

Location

Primary_assembly 1: 47,973,997-48,328,793 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 5 transcripts (splice variants), 268 orthologues, 1 paralogue and is associated with 34 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000161412.1	Arid1b-205	8540	2375aa	ENSRNOP00000110916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000084454.3	Arid1b-202	8493	2363aa	ENSRNOP00000069438.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVD3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000126261.1	Arid1b-204	8429	2338aa	ENSRNOP00000109702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000092976.3	Arid1b-203	8360	2315aa	ENSRNOP00000076073.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1B0GWZ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000022939.9	Arid1b-201	6544	1763aa	ENSRNOP00000022939.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LNP1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,