Gene: Chd6 ENSRNOG00000016744

Description

chromodomain helicase DNA binding protein 6 [Source:RGD Symbol;Acc:1310465]

Gene Synonyms

CHD-6, LOC311607

Location

Primary_assembly 3: 170,016,204-170,177,558 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 6 transcripts (splice variants), 192 orthologues, 31 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107966.2	Chd6-204	10712	2711aa	ENSRNOP00000094454.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ARM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000022861.8	Chd6-201	10511	2711aa	ENSRNOP00000022861.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QC41	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000106235.2	Chd6-203	10445	2689aa	ENSRNOP00000093958.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKM1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119650.2	Chd6-206	10359	2697aa	ENSRNOP00000076519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y6Q9	-
ENSRNOT00000114568.2	Chd6-205	9856	2463aa	ENSRNOP00000086889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6R3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000089958.3	Chd6-202	9127	2671aa	ENSRNOP00000071893.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K1L7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,