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Gene: Use1 ENSRNOG00000016619

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Description

unconventional SNARE in the ER 1 [Source:RGD Symbol;Acc:1306660]

Gene Synonyms

LOC290627, RGD1306660

Location

Primary_assembly 16: 18,070,793-18,075,814 forward strand.

GRCr8:CM070406.1

About this gene

This gene has 3 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115892.2	Use1-202	1282	279aa	ENSRNOP00000084167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1D9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000140520.1	Use1-203	1139	265aa	ENSRNOP00000112026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000022650.9	Use1-201	1136	278aa	ENSRNOP00000022650.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LQ22	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data