Gene: Smarcal1 ENSRNOG00000016503

Description

Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:RGD Symbol;Acc:1306134]

Gene Synonyms

LOC316477, LOC690314

Location

Primary_assembly 9: 81,689,531-81,735,396 forward strand.

GRCr8:CM070399.1

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues, 31 paralogues and is associated with 14 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000022459.7	Smarcal1-201	3005	910aa	ENSRNOP00000022459.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B4F769	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000071856.5	Smarcal1-202	2963	896aa	ENSRNOP00000064323.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QV60	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000156253.1	Smarcal1-203	2795	840aa	ENSRNOP00000102121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-