Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Clstn1 ENSRNOG00000016398

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Description

calsyntenin 1 [Source:RGD Symbol;Acc:1306458]

Gene Synonyms

LOC313717

Location

Primary_assembly 5: 165,314,309-165,377,625 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 4 transcripts (splice variants), 207 orthologues, 2 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000119851.2	Clstn1-204	4462	981aa	ENSRNOP00000086858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GFE6 A6IUB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000113486.2	Clstn1-203	4498	971aa	ENSRNOP00000089605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AC41	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000045063.5	Clstn1-201	4440	952aa	ENSRNOP00000047223.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QPW4 Q6Q0N0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000103823.2	Clstn1-202	4125	925aa	ENSRNOP00000094311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMV4	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data