Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ubxn11 ENSRNOG00000015476

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Description

UBX domain protein 11 [Source:RGD Symbol;Acc:620769]

Gene Synonyms

Soc, Ubxd5

Location

Primary_assembly 5: 151,613,565-151,637,272 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants), 187 orthologues, 4 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000021342.8	Ubxn11-201	1664	524aa	ENSRNOP00000021342.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QB34	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000114327.2	Ubxn11-205	1812	506aa	ENSRNOP00000077920.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y6V9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000100142.2	Ubxn11-202	1509	485aa	ENSRNOP00000077621.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y1D9 A6IT02 Q8R512	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000108876.2	Ubxn11-204	1496	477aa	ENSRNOP00000081428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSX6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000107239.2	Ubxn11-203	1155	367aa	ENSRNOP00000093554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJ03	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data