Gene: Scn5a ENSRNOG00000015049

Description

sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]

Gene Synonyms

Nav1.5, RATRSKM2X, RSKM2X, SCAL, Scn2x, rSkM2

Location

Primary_assembly 8: 128,098,613-128,196,470 reverse strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 94 orthologues, 26 paralogues and is associated with 60 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000082892.3	Scn5a-203	8448	2020aa	ENSRNOP00000069875.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JWG8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000064555.5	Scn5a-201	8448	2020aa	ENSRNOP00000060180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPK3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000066932.6	Scn5a-202	8286	1966aa	ENSRNOP00000060586.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LNF5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,