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- Splice variants
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Gene: Pdcd4 ENSRNOG00000014779

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Description

programmed cell death 4 [Source:RGD Symbol;Acc:620816]

Gene Synonyms

Dug

Location

Primary_assembly 1: 262,926,656-262,950,189 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants), 201 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000020155.5	Pdcd4-201	2460	487aa	ENSRNOP00000020155.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QAG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000104317.2	Pdcd4-203	2891	464aa	ENSRNOP00000076788.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y727	-
ENSRNOT00000119971.2	Pdcd4-204	2390	450aa	ENSRNOP00000076366.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1-1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000097657.2	Pdcd4-202	2273	432aa	ENSRNOP00000091790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1-2	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data