Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Rfx3 ENSRNOG00000014486

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Description

regulatory factor X3 [Source:RGD Symbol;Acc:1307779]

Gene Synonyms

LOC361746

Location

Primary_assembly 1: 234,863,462-235,122,536 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 6 transcripts (splice variants), 206 orthologues, 7 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000096629.2	Rfx3-204	9163	790aa	ENSRNOP00000091275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AF97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000095133.2	Rfx3-203	9133	780aa	ENSRNOP00000093035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GK32	-
ENSRNOT00000136770.1	Rfx3-206	9070	759aa	ENSRNOP00000105449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000104467.2	Rfx3-205	9004	737aa	ENSRNOP00000076688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y6Y1	-
ENSRNOT00000077544.3	Rfx3-202	8995	734aa	ENSRNOP00000070787.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JYT9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000023762.9	Rfx3-201	1420	458aa	ENSRNOP00000023762.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U2M9	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data