Gene: Rapgef1 ENSRNOG00000014316

Description

Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]

Gene Synonyms

C3G, C3G-1, C3G-1, C3G-2, C3G-2, Grf2

Location

Primary_assembly 3: 33,296,230-33,414,119 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 6 transcripts (splice variants), 228 orthologues, 35 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000060977.7	Rapgef1-201	6268	1256aa	ENSRNOP00000057696.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M8L9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000161849.1	Rapgef1-206	6231	1163aa	ENSRNOP00000102988.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000108449.2	Rapgef1-205	6224	1221aa	ENSRNOP00000088594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6H6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000095571.2	Rapgef1-203	6110	1171aa	ENSRNOP00000082703.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUL6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000093970.2	Rapgef1-202	5863	1123aa	ENSRNOP00000081072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQV4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000099738.2	Rapgef1-204	5752	1084aa	ENSRNOP00000080887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRV1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,