Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Gene: Ssr1 ENSRNOG00000014165

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Description

signal sequence receptor subunit 1 [Source:RGD Symbol;Acc:1310961]

Gene Synonyms

Ac2-238, LOC361233

Location

Primary_assembly 17: 27,039,269-27,067,348 forward strand.

GRCr8:CM070407.1

About this gene

This gene has 5 transcripts (splice variants) and 234 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077994.3	Ssr1-202	1735	347aa	ENSRNOP00000071334.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K075	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000084090.3	Ssr1-203	2423	287aa	ENSRNOP00000070389.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXS8 Q4V7D1	-
ENSRNOT00000019040.6	Ssr1-201	1966	292aa	ENSRNOP00000019040.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7F9K1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000109967.2	Ssr1-205	1823	273aa	ENSRNOP00000083441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVE2 A0A8I6GKJ3	-
ENSRNOT00000089736.3	Ssr1-204	1054	319aa	ENSRNOP00000070167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JX79 Q7TPJ0	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data