Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Jade1 ENSRNOG00000014066

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Description

jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]

Gene Synonyms

LOC310352, Phf17

Location

Primary_assembly 2: 126,471,124-126,524,252 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 202 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000172515.1	Jade1-205	5850	933aa	ENSRNOP00000105202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000098865.2	Jade1-202	5592	847aa	ENSRNOP00000090026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AB02	-
ENSRNOT00000018872.8	Jade1-201	5533	832aa	ENSRNOP00000018872.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZM64	-
ENSRNOT00000120008.2	Jade1-204	5297	787aa	ENSRNOP00000090751.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJ46	-
ENSRNOT00000100298.2	Jade1-203	2885	509aa	ENSRNOP00000088679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A9X2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data