Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
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Gene: Casz1 ENSRNOG00000013474

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Description

castor zinc finger 1 [Source:RGD Symbol;Acc:1563533]

Gene Synonyms

LOC313713, RGD1563533

Location

Primary_assembly 5: 164,527,112-164,677,014 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109654.2	Casz1-204	6945	1865aa	ENSRNOP00000081497.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS43	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000103298.2	Casz1-203	7955	1765aa	ENSRNOP00000079561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZR86	-
ENSRNOT00000094206.2	Casz1-202	7769	1789aa	ENSRNOP00000091853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AGF7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000018000.10	Casz1-201	5118	1705aa	ENSRNOP00000018000.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M0M0	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data