Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Phenotypes
Genetic Variation
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- Structural variants
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Gene: Trim55 ENSRNOG00000012723

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Description

tripartite motif-containing 55 [Source:RGD Symbol;Acc:1306943]

Gene Synonyms

LOC365751, MURF-2, Rnf29, muRF2

Location

Primary_assembly 2: 104,016,368-104,058,301 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 2 transcripts (splice variants), 272 orthologues and 62 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000017125.7	Trim55-201	2666	545aa	ENSRNOP00000017125.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UJ67 A6IHB9 Q5PQN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000094830.2	Trim55-202	2643	537aa	ENSRNOP00000084028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A0E8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data