Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
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Gene: Podxl ENSRNOG00000012495

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Description

podocalyxin-like [Source:RGD Symbol;Acc:621878]

Gene Synonyms

PC, PCLP-1

Location

Primary_assembly 4: 61,102,419-61,149,789 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 162 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000102804.2	Podxl-203	5953	718aa	ENSRNOP00000076632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBT0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000077406.3	Podxl-202	5205	466aa	ENSRNOP00000075234.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9WTQ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000016991.9	Podxl-201	5167	491aa	ENSRNOP00000016991.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q8D7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data