Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Snrnp40 ENSRNOG00000012219

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Description

small nuclear ribonucleoprotein U5 subunit 40 [Source:RGD Symbol;Acc:1309198]

Gene Synonyms

LOC313056, RGD1309198

Location

Primary_assembly 5: 147,984,656-148,018,725 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 2 transcripts (splice variants), 219 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000016325.9	Snrnp40-201	2477	400aa	ENSRNOP00000016325.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A944	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000149523.1	Snrnp40-202	769	228aa	ENSRNOP00000099467.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data