Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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Gene: Plac9 ENSRNOG00000011263

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Description

placenta associated 9 [Source:RGD Symbol;Acc:1306662]

Gene Synonyms

LOC361105

Location

Primary_assembly 16: 1,466,231-1,481,434 reverse strand.

GRCr8:CM070406.1

About this gene

This gene has 6 transcripts (splice variants), 107 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000142160.1	Plac9-204	960	216aa	ENSRNOP00000107625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000170060.1	Plac9-206	846	178aa	ENSRNOP00000109507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000014964.7	Plac9-201	840	213aa	ENSRNOP00000014964.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A4Q7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000102769.2	Plac9-202	699	129aa	ENSRNOP00000097622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AT08	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000155836.1	Plac9-205	696	128aa	ENSRNOP00000099517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000114500.2	Plac9-203	660	134aa	ENSRNOP00000079223.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZMZ4	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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